The purpose of the research work is to develop an organizational and economic mechanism for managing the innovative development of bioeconomy sectors based on an analysis of the resource potential of the regions. The objectives of the study are to clarify and systematize the conceptual apparatus of economic science in relation to the branches of bioeconomics based on the analysis of theoretical ideas about the essence, structure and principles of bioeconomics, identifying and summarizing its priority areas. The object of the research is the innovative development of bioeconomy branches. The subject of the study is the institutional environment and organizational and managerial interactions that arise in the process of managing the innovative development of bioeconomy industries.